UoM Yeast MetaboliNER Web Service


Item Description
Web Service NameUoM Yeast MetaboliNER Tool v1.0.1
Web Service URIhttp://nactem-t1.mib.man.ac.uk/cgi-bin/metaboliner/yeast_metaboliner.cgi
AuthorDr. Nobata, PhD, University of Manchester
FunctionRecognize yeast metabolite names in text
Usage http://nactem-t1.mib.man.ac.uk/cgi-bin/metaboliner/yeast_metaboliner.cgi with POSTDATA (upto 40KB)
In

Input = a sentence
SubscriptionID = "guest" for less than 100 hits/day. You need to obtain a subscription ID for more intensive use.

Out

Output = List of <METABOLITE sid=START_POSITION eid=END_POSITION ne=METABOLITE_NAME prob=PROBABILITY/>

Example Given a sentence, e.g. "Galactose is a type of sugar that is less sweet than glucose." NE outputs will be
<METABOLITE sid="0" eid="9" ne="Galactose" prob="0.92078"/>
<METABOLITE sid="53" eid="60" ne="glucose" prob="0.99230"/>
Demonstration
Input

SubscriptionID:

sample client code in Perl yeast_metaboliner_client.pl (alpha version)
WSDL file yeast_metaboliner.wsdl (alpha version)

Terms of Use

By using this web service, you agree to the general Terms and Conditions of Use for the NaCTeM Website, in addition to the following Terms of Use:

Last updated: 13 January 2011
by C. Nobata, Text Mining Group, School of Computer Science, University of Manchester